2022
- Ecological complexity and the biosphere: the next 30 years
Ricard Solé, Simon Levin
Philosophical Transactions of the Royal Society B, 377(1857), 20210376., DOI: 10.1098/rstb.2021.0376
- Network-level containment of single-species bioengineering
Victor Maull, Ricard Solé
Philosophical Transactions of the Royal Society B, 377(1857), 20210396., DOI: 10.1098/rstb.2021.0396
- Ecological firewalls for synthetic biology
Blai Vidiella, Ricard Solé
iScience 104658, DOI: 10.1016/j.isci.2022.104658
- Unicellular–multicellular evolutionary branching driven by resource limitations
Adriano Bonforti, Ricard Solé
Journal of the Royal Society Interface 19.191. DOI: 10.1098/rsif.2022.0018
- Evolution of Brains and Computers: The Roads Not Taken
Ricard Solé, Luís F. Seoane
Entropy 2022, 24(5), 665. DOI: 10.3390/e24050665
- Fixation and fluctuations in two-species cooperation
Jordi Piñero, Sidney Redner, Ricard Solé
Journal of Physics: Complexity. 3 015011
- Revisiting Leigh Van Valen’s “A New Evolutionary Law” (1973)
Ricard Solé
Biol Theory 17, 120–125, DOI: 10.1007/s13752-021-00391-w
- Transition Therapy: Tackling the Ecology of Tumour Phenotypic Plasticity
Guim Aguade, Stuart Kauffman and Ricard Solé
Bulletin of mathematical biology 84 (1), 1-20, DOI: 10.1007/s11538-021-00970-9
- Critical slowing down close to a global bifurcation of a curve of quasi neutral equilibria
Ernest Fontich, Antoni Guillamon, Tomás Lázaro, Tomás Alarcón, Blai Vidiella, Josep Sardanyés
Communications in Nonlinear Science and Numerical Simulation, DOI: 10.1016/j.cnsns.2021.106032
2021
- Synthetic criticality in cellular brains
Ricard Solé, Nuria Conde-Pueyo, Antoni Guillamon, Victor Maull, Jordi Pla, Josep Sardanyés, Blai Vidiella.
Journal of Physics: Complexity 2 041001, DOI: 10.1088/2632-072X/ac35b3
- Ecological mechanisms underlying aridity thresholds in global drylands
Miguel Berdugo, Blai Vidiella Rocamora, Ricard Solé, Fernando T. Maestre
Functional Ecology, DOI: 10.1111/1365-2435.13962
- Engineering self-organized criticality in living cells
Blai Vidiella, Antoni Guillamon, Josep Sardanyés, Victor Maull, Jordi Pla, Nuria Conde-Pueyo, Ricard Solé
Nature Communications 12, 4415 DOI: 10.1038/s41467-021-24695-4
- Habitat loss causes long extinction transients in small trophic chains
Blai Vidiella, Ernest Fontich, Sergi Valverde, and Josep Sardanyés
Theoretical Ecology, DOI:10.1007/s12080-021-00509-7
- The Planetary Wellbeing Initiative: Pursuing the Sustainable Development Goals in Higher Education
Josep M Antó, José Luis Martí, Jaume Casals, Paul Bou-Habib, Paula Casal, Marc Fleurbaey, Howard Frumkin, Manel Jiménez-Morales, Jacint Jordana, Carla Lancelotti, Humberto Llavador, Lela Mélon, Ricard Solé, Francesc Subirada, Andrew Williams
Sustainability 2021, 13(6), 3372
- Synthetic Lateral Inhibition in Periodic Pattern Forming Microbial Colonies
Salvador Duran-Nebreda, Jordi Pla, Blai Vidiella, Jordi Piñero, Nuria Conde-Pueyo, and Ricard Solé
ACS Synthetic Biology, 10, 2, 277–285 DOI: 10.1021/acssynbio.0c00318
- The ecology of cancer differentiation therapy I: non-spatial models
Ricard Solé and Guim Aguadé
Journal of Theoretical Biology, 511, 21 February 2021, 110552
2020
- Modeling brain reorganization after hemispherectomy
Luís F Seoane, Ricard Solé
Submitted, BioRxiv
- Synthetic soil crusts against green-desert transitions: a spatial model
Blai Vidiella, Josep Sardanyés and Ricard Solé
Royal Society Open Science 7: 200161
- Ageing, computation, and the evolution of neural regeneration processes
Aina Olle-Vila, Luís F. Seoane and Ricard Solé
Journal of the Royal Society Interface 17 (168), 20200181
- Using information theory to decode network coevolution
Ricard Solé
Science, 368(6497), 1315-1316
- Coexistence of nestedness and modularity in host–pathogen infection networks
Sergi Valverde, Blai Vidiella, Raul Montañez, Aurora Fraile, Soledad Sacristán, and Fernando García-Arenal
Nature Ecology & Evolution, DOI:10.1038/s41559-020-1130-9, Nature Ecology & Evolution Community (Blog)
- Evolving complexity: how tinkering shapes cells, software and ecological networks
Ricard V. Solé, and Sergi Valverde
Phil. Trans. R. Soc. B 375: 20190325.
- Phase Transitions in Virology
Ricard V. Solé, Josep Sardanyés and Santiago Elena
Preprints 2020, 2020020261
- Global ecosystem thresholds driven by aridity
Miguel Berdugo, Manuel Delgado-Baquerizo, Santiago Soliveres, Rocío Hernández-Clemente, Yanchuang Zhao, Juan J. Gaitán, Nicolas Gross, Hugo Saiz, Vincent Maire, Anika Lehman, Matthias C. Rillig, Ricard V. Solé and Fernando T. Maestre
Science; https://doi.org/10.1126/science.aay5958
- Criticality in Pareto Optimal Grammars?
Luís F. Seoane and Ricard Solé
Entropy 2020, 22(2), 165; https://doi.org/10.3390/e22020165
- Synthetic biology for terraformation: lessons from Mars, Earth and the microbiome
Nuria Conde-Pueyo, Blai Vidiella, Josep Sardanyés, Miguel Berdugo, Fernando Maestre, Victor de Lorenzo and Ricard Solé
Life 2020, 10(2), 14; https://doi.org/10.3390/life10020014
- Dynamics in a time-discrete food-chain model with strong pressure on preys
Lluís Alsedà, Blai Vidiella, Ricard Solé, Tomás Lázaro and Josep Sardanyés
Communications in Nonlinear Science and Numerical Simulation DOI: 10.1016/j.cnsns.2020.105187, arXiv link
2019
- Genetic instability as a driver for immune surveillance
Guim Aguadé-Gorgorió and Ricard Solé
Journal for ImmunoTherapy of Cancer, BioRxiv link
- Tumor neoantigen heterogeneity thresholds provide a time window for combination immunotherapy
Guim Aguadé and Ricard Solé
Submitted, BioRxiv link
- On dynamics and invariant sets in predator-prey maps
Blai Vidiella, Lluís Alsedà, Tomás Lázaro and Josep Sardanyés
Book Chapter: Dynamical Systems Theory (IntechOpen)
- Cellular heterogeneity results from indirect effects under metabolic tradeoffs
Aina Olle-Vila and Ricard Solé
Royal Society Open Science 6: 190281
- Habitat loss-induced tipping points in metapopulations with facilitation
Josep Sardanyés, Jordi Piñero and Ricard Solé
Population Ecology 61(4): 436-449
- Liquid Brains, Solid Brains
Ricard Solé, Melanie Moses and Stephanie Forrest
Phil. Trans. R. Soc. B.
- Statistical Physics of Liquid Brains
Jordi Piñero and Ricard Solé
Phil. Trans. R. Soc. B.
- Master equation approach to reinforcement learning
Edgar Vardanyan, Ricard Solé and David Saakian
Submitted
- Protocell cycles as thermodynamic cycles
B Corominas-Murta, H Fellermann and R Sole
In: ”The interplay between thermodynamics and computation in natural and artificial systems”, SFI Series
- Neutral theory of mutualistic communities
Jordi Piñero and Ricard Solé
In preparation
- The paradox of constant oceanic plastic debris: evidence for evolved microbial degradation?
Ricard Sole, Ernest Fontich, Blai Vidiella, Salva Duran-Nebreda, Raul Montañez, Jordi Pinero and Sergi Valverde
SubmittedNews and features
New Scientist: Newly-evolved microbes may be breaking down ocean plastics
Daily Mail Online: Newly-evolved microbes may be breaking down the plastics polluting our oceans
2018
- Viruses as Complex Adaptive Systems
Ricard Solé and Santiago Elena
SFI Primers in Complex Systems, Princeton U. Press, to appear December 2018 - The architecture of mutualistic networks as an evolutionary spandrel
Sergi Valverde, Jordi Piñero, Bernat Corominas-Murtra, Jose M Montoya, Lucas Joppa and Ricard Solé
Nature Ecology and Evolution 2(1), 94. - Cooperation in an RNA World
Ricard Solé
Nature Ecology and Evolution 2, doi:10.1038/s41559-018-0649-5 - Ultrasound approach tracks gut microbes
Ricard Solé and Nuria Conde-Pueyo
Nature 553, 36-37 - The road to synthetic multicellularity
Ricard Solé, Aina Ollé-Vila, Blai Vidiella, Salva Duran Nebreda and Nuria Conde-Pueyo
Current Opinion in Systems Biology 7, 60–67 - Information theory, predictability, and the emergence of complex life
Luis Seoane and Ricard Solé
Royal Society Open Science,5: 172221 - The morphospace of language networks
Luis Seoane and Ricard Solé
Scientific reports 8:10465 - Zipf's law, unbounded complexity and open-ended evolution
Bernat Corominas-Murtra, Luis Seoane and Ricard Solé
Royal Society Interface, https://arxiv.org/abs/1612.01605 - Exploiting delayed transitions to sustain semiarid ecosystems after catastrophic shifts
Blai Vidiella, Josep Sardanyés and Ricard Solé
Journal of the Royal Society Interface 15: 20180083 - Population Dynamics of Synthetic Terraformation Motifs
Ricard Solé, Raul Montañez, Salvador Duran, Daniel Rodriguez-Amor, Blai Vidiella, Josep Sardanyés
Royal Society Open Science 5: 180121 - Adaptive dynamics of unstable cancer populations: the canonical equation
Guim Aguadé and Ricard Solé
Evolutionary Applications, 2018 ;1–10 - Nonequilibrium entropic bounds for Darwinian replicators
Jordi Piñero and Ricard Solé
Entropy, 20(2), 98 - A simple spatiotemporal evolution model of a transmission power grid
Marti Rosas-Casals, Sergi Valverde and Ricard Solé
IEEE Systems Journal
2017
- Microbial biotechnology as a tool to restore degraded drylands
Fernando Maestre, Ricard Solé and Brajesh K. Singh
Microbial Biotechnology, DOI: 10.1111/1751-7915.12832 - Synthetic associative learning in engineered multicellular consortia
Javier Macía, Blai Vidiella and Ricard Solé
Journal Royal Society Interface 14, 20170158 - Spatial dynamics of synthetic microbial mutualists and their parasites
Daniel R. Amor, Raul Montañez, Salva Duran-Nebreda and Ricard Solé
PLOS Computational Biology, in press. arxiv.org/abs/1701.04767
News and features
"Synthetic Ecosystems" 15 SEPTEMBER 2017 • VOL 357 ISSUE 6356
- Systems poised to criticality through Pareto selective forces
Luis Seoane and Ricard Solé
Submitted, https://arxiv.org/abs/1510.08697 - The architecture of mutualistic networks as an evolutionary spandrel
Sergi Valverde, Jose M Montoya, Lucas Joppa and Ricard Solé
Nature Ecology and Evolution, accepted, https://arxiv.org/abs/1612.01606 - Abrupt transitions to tumor extinction: A quasispecies phenotypic model
Josep Sardanyés, Regina Martinez, Carles Simó and Ricard Solé
J. Math. Biol. 74(7), 1589-1609 - Full analysis of small hypercycles with short-circuits in prebiotic evolution
J Sardanyés, JT Lazaro, T Guillamon and E Fontich
Physica D 347, 90-108
2016
- Back from the brink
Ricard Solé
New Scientist 232, 36–37 - Bioremediation at a global scale: from the test tube to planet Earth
Victor de Lorenzo, Philippe Marliere and Ricard Solé
Microbial Biotechnology 9, 618-625. Microb. Biotech. - Spatial self-organization in hybrid models of multicellular adhesion
Adriano Bonforti, Salva Duran-Nebreda, Raul Montañez and Ricard Solé
Chaos 26, 103113 - La lógica de los monstruos
Ricard Solé
Tusquets Metatemas - The Major Synthetic Transitions of Evolution
Ricard Solé
Phil. Trans. Royal Soc. B 371 (1701), 20160175 - Synthetic transitions: towards a new synthesis
Ricard Solé
Phil. Trans. Royal Soc. B 371 (1701), 20150438 - Multiobjective optimization and phase transitions
Luis Seoane and Ricard Solé
Springer Proceedings in Complexity, pp 259-270. - Hacia una bioingenieria del planeta
Ricard Solé, Raul Montañez and Salva Duran-Nebreda
Investigación y Ciencia, June 2016 - Field theory of molecular cooperators
J. Piñero and R. Solé
Submitted, arXiv preprint arXiv:1508.01422v1 - Design principles for synthetic organs and organoids: the possible and the actual
Aina Ollé-Vila, Salva Duran-Nebreda, Nuria Conde-Pueyo, Raul Montañez and R. Solé
Integrative Biology 8, 485 - 503 - Predicting the stability of homologous gene duplications in a plant RNA virus
A Willemsen, MP Zwart, P Higueras, J Sardanyés, and SF Elena
Genome Biology and Evolution 8 (9), 3065-3082 - A cultural diffusion model for the rise and fall of programming languages
S Valverde and R Solé
Human Biology 87, 224-234 - Toward Synthetic Spatial Patterns in Engineered Cell Populations with Chemotaxis
S Duran-Nebreda and R Solé
ACS Synthetic Biology, 5, 654–661 - A synthetic multicellular memory device
A. Urrios, J. Macia, R. Manzoni, N. Conde, L. deNadal, F. Posas and R Solé
ACS Synthetic Biology, 5, 862-873. - Emergence of proto-organisms from bistable stochastic differentiation and adhesion
S Duran-Nebreda, A Bonforti, R Montañez, S Valverde and R Solé
J. Royal Society Interface, 13, 20160108. - Implementation of complex biological logic circuits using spatially distributed multicellular consortia
J. Macía, R. Manzoni, N. Conde, L. de Nadal, R. Solé, F. Posas
PLOS computational Biology 12(2): e1004685 - On singularities and black holes in combination-driven models of technological innovation networks
Ricard V. Solé, Daniel R. Amor, Sergi Valverde
PLOS ONE 11(1): e0146180 - Major transitions in information technology
Sergi Valverde
Phil. Trans. Royal Soc. B 371 (1701), 20150450 - Synthetic collective intelligence
R Sole, DR Amor, S Duran-Nebreda, N Conde, M Carbonell and R Montañez
Biosystems 148, 47-61.
2015
- BiMat: a MATLAB package to facilitate the analysis of bipartite networks
Cesar O. Flores, Timotheé Poisot, Sergi Valverde, Joshua S. Weitz
Methods in Ecology and Evolution 2015 (in press)News and features
A new tool based on virus and microbe interactions to analyze bipartite networks
- Bioengineering the biosphere?
Ricard V. Solé
Ecological Complexity 22, 40-49. Preprint: http://arxiv.org/abs/1410.8708v2News and features
Technology.org: Can Bioengineering Save Our Civilization?
MIT Tech Review: How Synthetic Organisms Could Terraform the Earth
- Synthetic circuit designs for earth terraformation
R Sole, R. Montañez and S. Duran-Nebreda
Biology Direct 10:37. - Computational implementation of a tunable multicellular memory circuit for engineered eukaryotic consortia
J. Sardanyés, A. Bonforti, N. Conde, R. Solé and J. Macía
Frontiers in Physiology 6: 281 - Bifurcations analysis of oscillating hypercycles
A. Guillamon, E. Fontich and J. Sardanyés
Journal of Theoretical Biology 387: 23 - Criticalidad en redes biológicas
S Valverde and J. Garcia-Ojalvo
Investigación y Ciencia - Images from the mind: BCI image evolution based on rapid serial visual presentation of polygon primitives
Luís F. Seoane, Stephan Gabler and Benjamin Blankertz
Brain-Computer Interfaces, in print (2015). - Emergent Chemical Behavior in Variable-Volume Protocells
Ben Shirt-Ediss, Ricard Solé and Kepa Ruiz-Mirazo
Life 5(1), 181-211 - Emergence of multicellularity in a model of cell growth, death and aggregation under size-dependent selection
Salva Duran-Nebreda and Ricard V. Solé
Royal Society Interface 12: 20140982 - Ambiguity in language networks
Ricard V. Solé and Luís F. Seoane
The Linguistic Review 32, 5-35. arXiv preprint arXiv:1402.4802v2
News and features :
BBC Future ( Philip Ball on BBC Future: The surprising benefits of ambiguous language
Santa Fe Institute news: Ambiguous words probably make communicating easier
- Activation of effector immune cells promotes tumor stochastic extinction: A homotopy analysis approach
J. Sardanyés, C. Rodrigues, C. Januário, N. Martins, G-Gil Gómez, and J. Duarte
Applied Mathematics and Computation, 252, 484-495 online: http://arxiv.org/pdf/1411.7896v1News and features :
- Dynamics and bifurcations in a simple quasispecies model of tumorigenesis
V. Castillo, J.T. Lázaro and J. Sardanyés
Computational and Applied Mathematics, in press arXiv preprint: 1411.6531 - How complex, probable, and predictable is genetically-driven Red Queen chaos?
J. Duarte, C. Rodrigues, C. Januário, N. Martins and J. Sardanyés
Acta Biotheoretica, 63: 341 - Phase transitions in Pareto optimal networks
Luis Seoane and Ricard Solé
Physical Review E, 92: 032807 - Structural Determinants of Criticality in Biological Networks
Sergi Valverde et al.
Frontiers in Physiology 6: 127. - Punctuated equilibrium in the large scale evolution of programming languages
Sergi Valverde and Ricard V. Solé
Journal of the Royal Society Interface 12
News and features :
Modeling the evolution of programming languages, Technology.org
Santa Fe Institute News: How computer programming languages evolve
2014
- A bottom-up characterisation of transfer functions for synthetic biology designs: lessons from enzymology
Max Carbonell, Salva Duran-Nebreda, Raul Montañez, Ricard Solé, Javier Macia and Carlos Rodríguez-Caso
Nucleic Acids research, 42 (22), 14060-14069 - Can a minimal replicating construct be identified as the embodiment of cancer?
Ricard V. Solé, Sergi Valverde, Carlos Rodríguez-Caso and Josep Sardanyés
Bioessays, 36(5), 503-512
News and features :
Bioessays editorial comment : Cancer: A disease of highly efficient and creative genome management?
Santa Fe Institute News : Is genetic instability the key to beating cancer?
- Catastrophic shifts and lethal thresholds in a propagating front model of unstable tumour progression
Daniel R. Amor and Ricard V. Solé
Physical Review E 90, 022710 - Cohabitation reaction–diffusion model for virus focal infections
Daniel R. Amor and Joaquim Fort
Physica A 416, 611-619 - Viral RNA replication modes: evolutionary and dynamical implications
Josep Sardanyés
Trends in Mathematics 2, 115-119 online arXiv preprint: 1404.0198 - Design principles of stripe-forming motifs: the role of positive feedback
Andrea Munteanu, James Cotterell, Ricard V. Solé and James Sharpe
Nature Scientific Reports, 4, 5003 - Experimental evolution of an emerging plant virus in host genotypes that differ in their susceptibility to infection
Hillung, J., Cuevas, J.M., Valverde, S., Elena, S.F.
Evolution doi: 10.1111/evo.12458 - External morphology explains the success of biological invasions
Ernesto Azzurro, Victor M. Tuset, Antoni Lombarte, Francesc Maynou, Daniel Simberloff, Armando Rodríguez-Pérez and Ricard V. Solé
Ecology Letters dii: 10.111/ele.12351
News and features :
UPF News: Develop a method for predicting biological invasions
Desarollado un método para predecir las invasiones biológicas
- How to Make a Synthetic Multicellular Computer
Javier Macía and Ricard V. Solé
PLoS one, 9(2), e81248 - In silico transitions to multicellularity
Ricard V. Solé and Salva Duran-Nebreda
arXiv preprint arXiv:1403.3217
In: Nedelcu, A.M. and Ruiz-Trillo, I. (eds.) (in press). Evolutionary Transitions to Multicellular Life: Principles and Mechanisms. Springer-Verlag London - Modelling Lipid Competition Dynamics in Heterogeneous Protocell Populations
Ben Shirt-Ediss, Kepa Ruiz-Mirazo, Fabio Mavelli and Ricard V. Solé
Nature Scientific Reports - Network morphospaces
Andrea A. Koenigsberger, Joaquin Goñi, Ricard Solé and Olaf Sporns
Journal of the Royal Society Interface, 12: 201408812 - Red Queen Coevolution on Fitness Landscapes
Ricard V. Solé and Josep SardanyésIn: Recent Advances in the Theory and Application of Fitness Landscapes. Springer-Verlag, p.301-38 preprint arXiv:1303.5633 - Synthetic biology: Biocircuits in synchrony
Ricard V. Solé and Javier Macía
Nature, 508(7496), 326-327 - Spatiotemporal evolution of a transmission power grid
Martí Rosas Casals, Sergi Valverde, Bernat Corominas-Murtra and Ricard V. Solé
Physical Review E (submitted) - Towards a mathematical theory of meaningful communication
Bernat Corominas-Murtra, Jordi Fortuny Andreu and Ricard V. Solé
Nature Scientific Reports, 4, 4587 - Variability in mutational fitness effects prevents full lethal transitions in large quasispecies populations
Josep Sardanyés, Carles Simó, Regina Martínez, Ricard V. Solé and Santiago F. Elena
Nature Scientific Reports, 4, 4625
2013
- A multiobjective optimization approach to statistical mechanics
Luís F. Seoane and Ricard V. Solé
arXiv preprint arXiv:1310.6372 - Accelerated tumor invasion under non-isotropic cell dispersal in glioblastomas
Joaquim Fort and Ricard V. Solé
New Journal of Physics, 15(5), 055001 - An analytic solution of a model of language competition with bilingualism and interlinguistic similarity
Victoria Otero-Espinar, Luís F. Seoane, Juan J. Nieto and Jorge Mira
Physica D: Nonlinear Phenomena, 264, 17-26 - Before the Endless Forms: Embodied Model of Transition from Single Cells to Aggregates to Ecosystem Engineering
Ricard V. Solé and Sergi Valverde
PloS one, 8(4), e59664 - Complex dynamics of defective interfering baculoviruses during serial passage in insect cells
Mark P. Zwart, Gorben P. Piljman, Josep Sardanyés, Jorge Duarte, Cristina Januário and Santiago F. Elena
Journal of Biological Physics, 39(2), 327-342 - Expanding the landscape of biological computation with synthetic multicellular consortia
Ricard V. Solé and Javier Macía
Natural Computing, 12(4), 485-497 - Lenguaje, redes y evolución
Ricard V. Solé, Bernat Corominas-Murtra and Jordi Fortuny
Investigación y ciencia: Edición Española de Scientific American, 440 (Mayo 2013), 58-67Translated to french: (Dec 2013): "La structure en réseaux du language". Pour la Science, 434
- Macroevolution in silico: scale, constraints and universals
Ricard V. Solé and Sergi Valverde
Paleontology, 56(6), 1327-1340.CHIMERA simulation software: <http://www.youtube.com/watch?v=re6xpg14A-A>
- Networks and the City
Sergi Valverde and Ricard V. Solé
Architectural Design, 83(4), 112-119 - On the Origin of Ambiguity in Efficient Communication
Jordi Fortuny and Bernat Corominas-Murtra
Journal of Logic, Language and Information, 22(3), 249-267 - On the origins of hierarchy in complex networks
Bernat Corominas-Murtra, Joaquin Goñi, Ricard V. Solé and Carlos Rodríguez-Caso
Proceedings of the National Academy of Sciences, 110(33), 13316-13321 - Phage–bacteria infection networks
Joshua S. Weitz, Timothée Poisot, Justin R. Meyer, Cesar O. Flores, Sergi Valverde, Matthew B. Sullivan, Michael E. Hochberg
Trends in microbiology, 21(2), 82-91 - "Plasticity, evolvability and the abundance of feed-forward loops in transcription networks"
Stefanie Widder, Ricard V. Solé and Javier Macía
In: Füllsack, Manfred (ed.) Networking Networks. Origins, Applications, Experiments. ISIS, p.81-100 - Synthetic biocomputation design using supervised gene regulatory networks
Luís F. Seoane and Ricard V. Solé
arXiv preprint arXiv:1310.5017 - The evolutionary ecology of technological innovations
Ricard V. Solé, Sergi Valverde, Martí Rosas Casals, Stuart A. Kauffman, Doyne Farmer and Niles Eldredge
Complexity 18(4), 15-27 - Topological complexity and predictability in the dynamics of a tumor growth model with Shilnikov's chaos
Jorge Duarte, Cristina Januário, Carla Rodrigues and Josep Sardanyés
International Journal of Bifurcation and Chaos, 23(07), 1350124-1350136
2012
- Complex Networks: Structure, Robustness and Function (book review)
Ricard V. Solé
Journal of the American Statistical Association - Distributed computation: the new wave of synthetic biological devices
Javier Macía, Francesc Posas and Ricard V. Solé
Trends in Biotechnology, 30(6), 342-349 - Evolvability of feed-forward loop architecture biases its abundance in transcription networks
Stefanie Widder, Ricard V. Solé and Javier Macía
BMC Systems Biology, 6(1), 7 - Evolved Modular Epistasis in Artificial Organisms
Sergi Valverde, Ricard V. Solé and Santiago Elena
Artificial Life, 13, 111-115 - "Motifs in Graphs"
Sergi Valverde and Ricard V. Solé
In: Meyers, R.A. (ed.) Computational Complexity: Theory, Techniques, and Applications. Springer-Verlag New York, p.1919-28 - Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages
Cesar O. Flores, Sergi Valverde and Joshua S. Weitz
The ISME Journal, 7(3), 520. - "Phase Transitions in Cancer"
Ricard V. Solé
In: d’Onofrio, A. et al. (eds.) New Challenges for Cancer Systems Biomedicine. Springer-Verlag. p.35-51 - The causes of epistasis in genetic networks
Javier Macía, Ricard V. Solé and Santiago Elena
Evolution, 66(2), 586-596 - Vidas sintéticas.
Ricard V. Solé
Barcelona: Tusquets Editores (Colección Metatemas, 120)News related about this book:
RNE (02/12/2012): Fallo de sistema. "Vidas Sintéticas"
El País (14/07/2012): "La verdad no es un concepto científico"
2011
- Analysis of major failures in Europe's power grid
Marti Rosas Casals and Ricard V. Solé
International Journal of Electrical Power & Energy Systems, 33(3), 805-808 - "Catastrophes and Complex Networks in Genomically Unstable Tumorigenesis"
Ricard V. Solé
In: Deisboeck, T.S. & Stamatakos, G.S. (eds.) Multiscale Cancer Modeling. New York: Taylor & Francis Group, p.67-86. - Convergent Evolutionary Paths in Biological and Technological Networks
Ricard V. Solé, Sergi Valverde and Carlos Rodriguez-Caso
Evolution: Education and Outreach, 4(3), 415-426 - Distributed Biological Computation with Multicellular Engineered Networks
Sergi Regot, Javier Macía, Nuria Conde, Kentaro Furukawa, Jimmy Kjellen, Tom Peeters, Stefan Hohmann, Eulàlia de Nadal, Francesc Posas and Ricard V. Solé
Nature, 469(7329), 207-211This paper has been featured in
Santa Fe Institute News (21/12/2010): "How to Build a Living Computer"
The seven stones (21/12/2010): Molecular Systems Biology Blog at Nature.com
Chemical and Engineering News (13/12/2010): "Cell-Mediated Computation"
Biocat (13/12/2010): "UPF researchers create a living cellular calculator"
Avui (09/12/2010): "Els enginyers de la vida"
ABC (09/12/2010): "Científicos de la UPF crean un sistema celular vivo capaz de tomar decisiones"
La Vanguardia (08/12/2010): "La primera computadora biológica"
El País (08/12/2010): "Células que calculan"
Ara (08/12/2010): "Creen un sistema cel·lular viu amb capacitat de decisió complexa"
GlobalTalent: A living cell system with artificial computational capacity
- "Dynamical Systems Analysis of a Protocell Lipid Compartment"
Ben Shirt-Ediss
In: Kampis,G.; Karsai,I. & Szathmáry,E. (eds.) Advances in Artificial Life. Darwin Meets von Neumann. Springer-Verlag, p.230-9 - Emergence of Zipf’s law in the evolution of communication
Bernat Corominas-Murtra, Jordi Fortuny and Ricard V. Solé
Physical Review E, 83(3), 036115 - Measuring the hierarchy of feedforward networks
Bernat Corominas-Murtra, Carlos Rodríguez-Caso, Joaquín Goñi and Ricard V. Solé
Chaos: An Interdisciplinary Journal of Nonlinear Science, 21(1), 016108.This paper was highlighted in: Chaos
- Modeling the effector-regulatory T cell cross-regulation reveals the intrinsic character of relapses in Multiple Sclerosis
Nieves Vélez de Mendizábal, Jorge Carneiro, Ricard V. Solé, Joaquín Goñi, Jean Bragard, Ivan Martinez-Forero, Sara Martinez-Pasamar, Jorge Sepulcre, Javier Torrealdea, Francesca Bagnato, Jordi Garcia-Ojalvo and Pablo Villoslada
BMC Systems Biology, 5(1), 114 - Phase transitions
Ricard V. Solé
New Jersey: Princeton University Press (Complexity Primers Series) - Statistical Structure of Host-Phage Interactions
Cesar O. Flores, Justin R. Meyer, Sergi Valverde, Lauren Farr and Joshua S. Weitz
Proceedings of the National Academy of Sciences, 108(28), E288-E297Highlighted in:
UPF (21/07/2011): "IBE: Viruses and bacteria have common infection patterns"
- "Synthetic biocomputation: The possible and the actual"
Ricard V. Solé and Javier Macía
In: European Conference on Artificial Life 2011. Cambridge, MA: MIT Press, p.29-36 - Tempo and Mode of Plant RNA Virus Escape from RNA Interference-Mediated Resistance
Guillaume Lafforgue, Fernando Martínez, Josep Sardanyés, Francisca de la Iglesia, Qi-Wen Niu, Shih-Shun Lin, Ricard V. Solé, Nam-Hai Chua, José-Antonio Daròs and Santiago F. Elena
Journal of virology, 85(19), 9686-9695Highlighted in: Journal of Virology (Spotlight section)
- The semantic organization of the animal category: evidence from semantic verbal fluency and network theory
Joaquín Goñi, Gonzalo Arrondo, Jorge Sepulcre, Iñigo Martincorena, Nieves Vélez de Mendizábal, Bernat Corominas-Murtra, Bartolomé Bejarano, Sergio Ardanza-Trevijano, Herminia Peraita, Dennis P. Wall and Pablo Villoslada
Cognitive Processing, 12(2), 183-196
2010
- Avoiding transcription factor competition at promoter level increases the chances of obtaining oscillation
Andreea Munteanu, Marco Constante, Mark Isalan and Ricard V. Solé
BMC Systems Biology, 4(1), 66 - "Discerning Electricity Consumption Patterns from Urban Allometric Scaling"
Ricard Horta-Bernus, M. Rosas-Casals and Sergi Valverde
In: Complexity in Engineering, 2010. COMPENG'10. IEEE, p.49-51 - Diversity, competition, extinction: the ecophysics of language change
Ricard V. Solé, Bernat Corominas-Murtra and Jordi Fortuny
Journal of The Royal Society Interface, 7(53), 1647-1664 - "Emergence of Scale-Free Syntax Networks"
Bernat Corominas-Murtra, Sergi Valverde and Ricard V. Solé
In: Nolfi, S. & Mirolli, M. (eds.) Evolution of Communication and Language in Embodied Agents. Springer-Verlag Berlin, p.83-101 - Exploring the randomness of directed acyclic networks
Joaquín Goñi, Bernat Corominas-Murtra, Ricard V. Solé and Carlos Rodriguez-Caso
Physical Review E, 82(6), 066115 - Genome size, self-organization and DNA's dark matter
Ricard V. Solé
Complexity, 16(1), 20-23 - Hierarchy and Information in Feedforward Networks
Bernat Corominas-Murtra, Joaquín Goñi, Carlos Rodriguez-Caso and Ricard V. Solé
Santa Fe Institute Working Paper, 10-12-036 - Language networks: Their structure, function, and evolution
Ricard V. Solé, Bernat Corominas-Murtra, Sergi Valverde and Luc Steels
Complexity, 15(6), 20-26 - On nestedness in ecological networks
Lucas Joppa, José Mª Montoya, Ricard V. Solé, James Sanderson and Stuart Pimm
Evolutionary Ecology Research, 12(1), 35-46 - Percolation of arbitrary uncorrelated nested subgraphs
Bernat Corominas-Murtra
The European Physical Journal B, 77(2), 213-217 - Simple genomes, complex interactions: Epistasis in RNA virus
Santiago F. Elena, Ricard V. Solé and Josep Sardanyés
Chaos: An Interdisciplinary Journal of Nonlinear Science, 20(2), 026106Highlighted in: Chaos (27/07/2010): "Getting a step ahead of pathogens"
- Simple model of recovery dynamics after mass extinction
Ricard V. Solé, Joan Saldanya, José Mª Montoya and Douglas H. Erwin
Journal of Theoretical Biology, 267(2), 193-200 - Some Formal Considerations on the Generation of Hierarchically Structured Expressions
Jordi Fortuny Andreu and Bernat Corominas-Murtra
Catalan Journal of Linguistics, 8, 99-111 - Switcher-random-walks: a cognitive-inspired mechanism for network exploration
Joaquín Goñi, Iñigo Martincorena, Bernat Corominas-Murtra, Gonzalo Arrondo, Sergio Ardanza-Trevijano and Pablo Villoslada
International Journal of Bifurcations and Chaos, 20(3), 913-922 - Topological reversibility and causality in feed-forward networks
Bernat Corominas-Murtra, Carlos Rodríguez-Caso, Joaquín Goñi and Ricard V. Solé
New Journal of Physics, 12(11), 113051Chosen for the IOP Science Select: special IOP articles chosen for their quality and recency
- Universality of Zipf's law
Bernat Corominas-Murtra and Ricard V. Solé
Physical Review E, 82(1), 011102 - When metabolism meets topology: Reconciling metabolite and reaction networks
Raúl Montañez, Miguel Angel Medina, Ricard V. Solé and Carlos Rodríguez-Caso
Bioessays, 32(3), 246-256
2009
- Distributed robustness in cellular networks: insights from synthetic evolved circuits
Javier Macía and Ricard V. Solé
Journal of The Royal Society Interface, 6(33), 393-400 - Dynamic Signaling in the Hog1 MAPK Pathway Relies on High Basal Signal Transduction
Javier Macía, Sergi Regot, Tom Peeters, Nuria Conde, Ricard V. Solé and Francesc Posas
Science Signaling, 2(63), ra13Discussed in: Bader, Joel. "New Connections, New Components, Real Dynamics". Science Signaling, 2(82), pe48
- Dynamical role of the degree of intraspecific cooperation: A simple model for prebiotic replicators and ecosystems
Ernest Fontich and Josep Sardanyés
Physica A: Statistical Mechanics and its Applications, 388(9), 1867-1878 - Ecological networks–beyond food webs (Review)
Thomas C. Ings, José M. Montoya, Jordi Bascompte et al.
Journal of Animal Ecology, 78(1), 253-269 - Evolution and self-assembly of protocells
Ricard V. Solé
The International Journal of Biochemistry & Cell Biology, 41(2), 274-284 - Ghosts in high dimensional non-linear dynamical systems: The example of the hypercycle
Josep Sardanyés
Chaos, Solitons & Fractals, 39(1), 92-100 - Human Synthetic Lethal Inference as Potential Anti-cancer Target Gene Detection
Nuria Conde-Pueyo, Andreea Munteanu, Ricard V. Solé and Carlos Rodriguez-Caso
BMC Systems Biology, 3(1), 116 - Monomeric Bistability and the Role of Autoloops in Gene Regulation
Stefanie Widder, Javier Macía and Ricard V. Solé
PloS one, 4(4), e5399 - "Motifs in Graphs"
Sergi Valverde and Ricard V. Solé
In: Meyers, Robert A. (ed.) Encyclopedia of Complexity and Systems Science. Springer-Verlag New York, p.5692-702 - Mutate now, die later. Evolutionary dynamics with delayed selection
Andreea Munteanu and Peter F. Stadler
Journal of Theoretical Biology, 260(3), 412-421 - On the basic computational structure of gene regulatory networks
Carlos Rodríguez-Caso, Bernat Corominas-Murtra and Ricard V. Solé
Molecular BioSystems,5(12), 1617-1629This paper is at the cover of: Systems Biology Special Issue
- Percolation in insect nest networks: Evidence for optimal wiring
Sergi Valverde, Bernat Corominas-Murtra, Andrea Perna, Pascale Kuntz, Guy Theraulaz and Ricard V. Solé
Physical Review E, 79(6), 066106This paper has been cited in: the Virtual Journal of Biological Physics Research
- Press perturbations and indirect effects in real food webs
José Mª Montoya, Guy Woodward, Mark Emmerson and Ricard V. Solé
Ecology, 90(9), 2426-2433 - Reciprocal specialization in ecological networks
Lucas N. Joppa, Jordi Bascompte, José Mª Montoya, Ricard V. Solé, Jim Sanderson and Stuart L. Pimm
Ecology letters, 12(9), 961-969 - Redes complejas. Del genoma a Internet
Ricard V. Solé
Barcelona: Tusquets Editores (Colección Metatemas, 105)Featured in:
El País (10/07/2010): "De lo crudo a lo cocido"
SEBBM (Dic 2009): "Existimos, luego somos redes", p.45. (Reseñas)
- Replication mode and landscape topology differentially affect RNA virus mutational load and robustness
Josep Sardanyés, Ricard V. Solé and Santiago Elena
Journal of Virology, 83(23), 12579-12589 - Specialized or flexible feed-forward loop motifs: a question of topology
Javier Macía and Ricard V. Solé
BMC Systems Biology, 3(1), 84 - "The Hypercycle: From Molecular to Ecosystems Dynamics"
Josep Sardanyés
In: Dupont, A. & Jacobs, H. (eds.) Landscape Ecology Research Trends. New York: Nova Science Publishers, Inc., p.113-24 - The ontogeny of scale-free syntax networks: phase transitions in early language acquisition
Bernat Corominas-Murtra, Sergi Valverde and Ricard V. Solé
Advances in Complex Systems, 12(03), 371-392 - The topology of drug-target interaction networks: implicit dependence on drug properties and target families
Jordi Mestres, Elisabet Gregori-Puigjané, Sergi Valverde and Ricard V. Solé
Molecular BioSystems, 5(9), 1051-1057Highlighted in:
Klipp, E. et al. "Biochemical network-based drug-target prediction". Current Opinion in Biotechnology, 21(4), 511-6 - Why are cellular switches Boolean? General conditions for multistable genetic circuits
Javier Macía, Stefanie Widder and Ricard V. Solé
Journal of Theoretical Biology, 261(1), 126-135This paper has been featured in: Faculty of 1000 Biology
- Xarxes complexes: Del genoma a Internet
Ricard V. Solé
Barcelona: Edicions 62 (Biblioteca Universal Empúries)Featured in:
El País (18/06/2009): Quadern. "Impossible desconnectar", p.5
Vilaweb (28/05/2009): "Xarxes complexes"
Diari Avui, Dissabte 26 Març 2009
2008
- Cancer stem cells as the engine of unstable tumor progression
Ricard V. Solé, Carlos Rodríguez-Caso, Thomas S. Deisboeck and Joan Saldanya
Journal of Theoretical Biology, 253(4), 629-637 - Data Completeness: the Achilles heel of Drug-Target Networks
Jordi Mestres, Elisabet Gregori-Puigjané, Sergi Valverde and Ricard V. Solé
Nature Biotechnology, 26, 983-984 - Error threshold ghosts in a simple hypercycle with error prone self-replication
Josep Sardanyés
Chaos, Solitons and Fractals, 35(2), 313-319 - Fat tails, long memory, maturity and ageing in open-source software projects
Damien Challet and Sergi Valverde
arXiv preprint arXiv:0802.3170
PHYSCOMNET 2008: <http://www.physcomnet.org/> - General scaling law in the saddle-node bifurcation: a complex phase space study
Ernest Fontich and Josep Sardanyés
Journal of Physics A: Mathematical and Theoretical, 41(1), 015102 - Macroecological patterns and niche structure in a new marine food web
Gabriel Yvon-Durocher, José Mª Montoya, Mark C. Emmerson and Guy Woodward
Central European Journal of Biology, 3(1), 91-103 - Matching allele dynamics and coevolution in a minimal predator-prey replicator model
Josep Sardanyés and Ricard V. Solé
Physics Letters A, 372(4), 341-350 - "Models of Protocell Replication"
Ricard V. Solé, Javier Macía, Harold Fellermann, Andreea Munteanu, Josep Sardanyés and Sergi Valverde
In: Rasmussen, S. et al. (eds.) Protocells: Bridging Nonliving and Living Matter. MIT Press Scholarship Online, p.213-31 - Nested subgraphs of complex networks
Bernat Corominas-Murtra, José F. F. Mendes and Ricard V. Solé
Journal of Physics A: Mathematical and Theoretical, 41(38), 385003 - Neutrality and Robustness in Evo-Devo: Emergence of Lateral Inhibition
Andreea Munteanu and Ricard V. Solé
PLoS computational biology, 4(11), e1000226 - On Networks and Monsters: The Possible and the Actual in Complex Systems
Ricard V. Solé
Leonardo (MIT Press), 41(3), 253-258 - Robustness of the European power grids under intentional attack
Ricard V. Solé, Martí Rosas Casals, Bernat Corominas-Murtra and Sergi Valverde
Physical Review E, 77(2), 026102 - Simple quasispecies models for the Survival-of-the-flattest effect: The role of space
Josep Sardanyés, Santiago F. Elena and Ricard V. Solé
Journal of Theoretical Biology, 250(3), 560-568 - Spontaneous emergence of modularity in cellular networks
Ricard V. Solé and Sergi Valverde
Journal of The Royal Society Interface, 5(18), 129-133Highlighted in: Nature Reviews Genetics, 8, 651. (Sep 2007)
- Superdiffusion and encounter rates in diluted, low dimensional worlds
Fede Bartumeus, Pau Fernández, M. G. E. da Luz, Jordi Catalan, Ricard V. Solé and Simon A. Levin
The European Physical Journal Special Topics, 157(1), 157-166 - The structure of gallery networks in the nests of termite Cubitermes spp. revealed by X-ray tomography
Andrea Perna, Christian Jost, Etienne Couturier, Sergi Valverde, Stéphane Douady and Guy Theraulaz
Naturwissenschaften, 95(9), 877-884Featured in: Le Figaro (13/06/2008): "L'architecture intérieure des termitières décryptée".
- "The Topological Fortress of Termites"
Andrea Perna, Christian Jost, Sergi Valverde, Jacques Gautrais, Guy Theraulaz and Pascale Kuntz
In: Liò, P. et al. (eds.) Bio-Inspired Computing and Communication. Springer Berlin Heidelberg, p.165-73 - "Topological Analysis of Cellular Networks"
Carlos Rodríguez-Caso and Núria Conde-Pueyo
In: Giannopoulou, E. G. (ed.) Data Mining in Medical and Biological Research. Intech Publishers, p.253-66 - Topological efficiency in three-dimensional gallery networks of termite nests
Andrea Perna, Sergi Valverde, Jacques Gautrais, Christian Jost, Ricard V. Solé, Pascale Kuntz and Guy Theraulaz
Physica A: Statistical Mechanics and its Applications, 387(24), 6235-6244
2007
- Chaotic Stability in Spatially-Resolved Host-Parasite Replicators: The Red Queen on a Lattice
Josep Sardanyés and Ricard V. Solé
International Journal of Bifurcations and Chaos, 17(2), 589-606 - Crossover from Endogenous to Exogenous Activity in Open-Source Software Development
Sergi Valverde
Europhysics Letters, 77(2), 20002 - Delayed transitions in non-linear replicator networks: About ghosts and hypercycles
Josep Sardanyés and Ricard V. Solé
Chaos, Solitons & Fractals, 31(2), 305-315 - Ecological Networks: Information Theory Meets Darwin's Entangled Bank
José Mª Montoya and Gabriel Yvon-Durocher
Current Biology, 17(4), R128-R130 - Ecology: Scaling laws in the drier
Ricard V. Solé
Nature, 449(7159), 151-153 - Evolutionary studies: Evolution within food webs: the possible and the actual
José Mª Montoya
Heredity, 99, 477-478 - Generic Darwinian selection in catalytic protocell assemblies
Andreea Munteanu, Camille Stephan-Otto Attolini, Steen Rasmussen, Hans-Joachim Ziock and Ricard V. Solé
Philosophical Transactions of the Royal Society B: Biological Sciences, 362(1486), 1847-1855 - Hierarchical small worlds in software architecture
Sergi Valverde and Ricard V. Solé
arXiv preprint arXiv:0307278v2
Dynamics of Continuous Discrete and Impulsive Systems. Series B: Applications & Algorithms, special issue <http://www.watsci.org/B/index.html> - K-scaffold subgraphs of complex networks
Bernat Corominas-Murtra, Sergi Valverde, Carlos Rodríguez-Caso and Ricard V. Solé
Europhysics Letters, 77(1), 18004 - Life cycle of a minimal protocell: a dissipative particle dynamics study
Harold Fellermann, Steen Rasmussen, Hans-Joachim Ziock and Ricard V. Solé
Artificial Life, 13(4), 319-345 - Minimal model of self-replicating nanocells: a physically embodied information-free scenario
Harold Fellermann and Ricard V. Solé
Philosophical Transactions of the Royal Society B: Biological Sciences, 362(1486), 1803-1811 - "Modularity in Biological Networks"
Ricard V. Solé, Sergi Valverde and Carlos Rodríguez-Caso
In: Képès, F. (ed.) Biological Networks. World Scientific Publishing (Complex Systems and Interdisciplinary Science, 3), p.21-40 - Network statistics on early English Syntax: Structural criteria
Bernat Corominas-Murtra
arXiv preprint arXiv:0704.3708 - "Networks in Cell Biology"
Carlos Rodríguez-Caso and Ricard V. Solé
In: Dubitzky, W.; Granzow, M. & Berrar, D.(eds) Fundamentals of Data Mining in Genomics and Proteomics. Springer Science, p.203-26New book: Buchanan, M. (ed.) (2010). Networks in cell biology. Cambridge University Press
- Neutral fitness landscapes in signalling networks
Pau Fernández and Ricard V. Solé
Journal of The Royal Society Interface, 4(12), 41-47 - Protocell self-reproduction in a spatially extended metabolism–vesicle system
Javier Macía and Ricard V. Solé
Journal of Theoretical Biology, 245(3), 400-410 - Red Queen strange attractors in host-parasite replicator gene-for-gene coevolution
Josep Sardanyés and Ricard V. Solé
Chaos, Solitons & Fractals, 32(5), 1666-1678 - Self-Organization versus Hierarchy in Open Source Social Networks
Sergi Valverde and Ricard V. Solé
Physical Review E, 76(4), 046118Cited in: the Virtual Journal of Biological Physics Research
- Spatio-temporal dynamics in simple asymmetric hypercycles under weak parasitic coupling
Josep Sardanyés and Ricard V. Solé
Physica D: Nonlinear Phenomena, 231(2), 116-129 - Synthetic protocell biology: from reproduction to computation
Ricard V. Solé, Andreea Munteanu, Carlos Rodríguez-Caso and Javier Macía
Philosophical Transactions of the Royal Society B: Biological Sciences, 362(1486), 1727-1739 - Synthetic Turing protocells: vesicle self-reproduction through symmetry-breaking instabilities
Javier Macía and Ricard V. Solé
Philosophical Transactions of the Royal Society B: Biological Sciences, 362(1486), 1821-1829 - The role of cooperation and parasites in non-linear replicator delayed extinctions
Josep Sardanyés and Ricard V. Solé
Chaos, Solitons & Fractals, 31(5), 1279-1296 - Topological vulnerability of the European power grid under errors and attacks
Martí Rosas-Casals, Sergi Valverde and Ricard V. Solé
International Journal of Bifurcations and Chaos, 17(7), 2465-2475 - Topology and Evolution of Technology Innovation Networks
Sergi Valverde and Ricard V. Solé
Physical Review E, 76(5), 056118Cited in: the Virtual Journal of Biological Physics Research
- Unravelling Charles Darwin's entangled bank
José Mª Montoya
Planet Earth, Spring 2007, 18-19
2006
- Are network motifs the spandrels of cellular complexity?
Ricard V. Solé and Sergi Valverde
Trends in Ecology & Evolution, 21(8), 419-422 - Bifurcations and phase transitions in spatially-extended two-member hypercycles
Josep Sardanyés and Ricard V. Solé
Journal of Theoretical Biology, 243(4), 468-482 - "Ecological Network Meltdown from Habitat Loss and Fragmentation"
Ricard V. Solé and José Mª Montoya
In: Pascual, M. & Dunne, J.A.(eds.) Ecological Networks. Linking Structure to Dynamics in Food Webs. Oxford Univ. Press, p.325-47 - Ecological networks and their fragility
José Mª Montoya, Stuart L. Pimm and Ricard V. Solé
Nature, 442(7100), 259-264This paper has been featured in:
BBC Mundo Ciencia (25/07/2006): "Ecosistema descifrado"
Nature's cover of journal issue (20/07/2006): "Ecological Complexity Untangled"
El País (20/07/2006): "La mariposa que sostiene el ecosistema"
El Periódico (20/07/2006): "Dependencias naturales"
La Vanguardia (20/07/2006): "SOS por la biodiversidad", p.27 & p.28
Avui (20/07/2006): "Arquitectura ecològica"
Clarín (10/01/2001): "La Web estaría creciendo según leyes naturales"
- Ghosts in the origins of life?
Josep Sardanyés and Ricard V. Solé
International Journal of Bifurcations and Chaos, 16(09), 2761-2765 - Information catastrophe in RNA viruses through replication thresholds
Ricard V. Solé, Josep Sardanyés, Juana Díez and Antonio Mas
Journal of Theoretical Biology, 240(3), 353-359 - Network topology and self-consistency in language games
Bernat Corominas-Murtra and Ricard V. Solé
Journal of Theoretical Biology, 241(2), 438-441 - "On the Nature of Design"
Sergi Valverde and Ricard V. Solé
In: Braha, D.; Minai, A. A. & Bar-Yam, Y. (eds.) Complex Engineered Systems. Springer, p.72-100 - Pattern formation in noisy self-replicating spots
Andreea Munteanu and Ricard V. Solé
International Journal of Bifurcations and Chaos, 16(12), 3679-3685 - Phenotypic Diversity and Chaos in a Minimal Cell Model
Andreea Munteanu and Ricard V. Solé
Journal of Theoretical Biology, 240(3), 434-442 - Self-Organization in Complex Ecosystems
Ricard V. Solé and Jordi Bascompte
New Jersey: Princeton University Press (Monographs in Population Biology, 42)Our book has been featured in:
Igor Linkov (Mar 2008): The Quaterly Review of Biology, 83(1), 133
Princeton U. Press, by Will Wilson and Lord Robert M. May
The Physics of Ecology, Trends in Ecology and Evolution, by Stefan Bornholdt
- Self-organization patterns in wasp and open source communities
Sergi Valverde, Guy Theraulaz, Jacques Gautrais, Vincent Fourcassié and Ricard V. Solé
Intelligent Systems, IEEE, 21(2), 36-40 - "Spatial Dynamics in Cancer"
Ricard V. Solé, Isabel González-García and Josep Costa
In: Deisboeck, T. S. & Kresh, J. Y. (eds.) Complex Systems in Biomedicine. Springer Inc., p. 557-572 - The Fittest Versus the Flattest: Experimental Confirmation of the Quasispecies Effect with Subviral Pathogens
Francisco Codoñer, Jose Daròs, Ricard V. Solé and Santiago Elena
PLoS pathogens, 2(12), e136 - "The Role of Computation in Complex Regulatory Networks"
Pau Fernández and Ricard V. Solé
In: Koonin, E.V. et al. (eds.) Power Laws, Scale-Free Networks and Genome Biology. Urekah.com and Springer Science, p.206-25 - Topological patterns in street networks of self-organized urban settlements
Jerome Buhl, Jacques Gautrais, Reeves Nicolas, Ricard V. Solé, Sergi Valverde, Pascale Kuntz and Guy Theraulaz
The European Physical Journal B - Condensed Matter and Complex Systems, 49(4), 513-522
2005
- "Biodiversity Loss and Ecological Network Structure"
Jane Memmott, David Alonso, Eric L. Berlow, Andy Dobson, Jennifer A. Dunne, Ricard V. Solé and Joshua Weitz
In: Pascual, M. & Dunne, J.A.(eds.) Ecological Networks. Linking Structure to Dynamics in Food Webs. Oxford Univ. Press, p.325-47 - Body size in ecological networks
Guy Woodward, Bo Ebenman, Mark Emmerson, José Mª Montoya, Jens M. Olesen, Alfredo Valido and Philip H. Warren
Trends in ecology & evolution, 20(7), 402-409 - "Body size, interaction strength, and food web dynamics"
Mark C. Emmerson, José Mª Montoya and Guy Woodward
In: De Ruiter, P. C.; Wolters, V. & Moore, J. C. (eds) Dynamics Food Webs. Academic Press, p.167-78 - "Body-size determinants of the structure and dynamics of ecological networks: Scaling from the individual to the ecosystem"
Guy Woodward, Bo Ebenman, Mark C. Emmerson, José Mª Montoya, J. M. Olesen, A. Valido and Philip H. Warren
In: De Ruiter, P. C.; Wolters, V. & Moore, J. C. (eds) Dynamics Food Webs. Academic Press, p.179-97 - Chaos in Chemoton Dynamics
Andreea Munteanu and Ricard V. Solé
Santa Fe Institute Working Paper, 05-05-017 - Competition and Introduction Regime Shape Exotic Bird Communities in Hawaii
Javier G. P. Gamarra, José Mª Montoya, David Alonso and Ricard V. Solé
Biological Invasions, 7(2), 297-307 - Gap Percolation in Rainforests
Ricard V. Solé, Fede Bartumeus and Javier G. P. Gamarra
Oikos, 110(1), 177-185 - "Graphs as Models of Large-Scale Biochemical Organization"
Pau Fernández and Ricard V. Solé
In: Bonchev, D. & Rouvray, D. H. (eds.) Complexity in Chemistry, Biology, and Ecology. Springer Science, p.155-89 - Language: Syntax for free?
Ricard V. Solé
Nature, 434(7031), 289 - Logarithmic growth dynamics in software networks
Sergi Valverde and Ricard V. Solé
Europhysics Letters, 72(5), 858-864 - Network motifs in computational graphs: A case study in software architecture
Sergi Valverde and Ricard V. Solé
Physical Review E, 72(2), 026107 - "Perturbations and indirect effects in complex food webs"
José Mª Montoya, Mark C. Emmerson, Ricard V. Solé and Guy Woodward
In: De Ruiter, P. C.; Wolters, V. & Moore, J. C. (eds) Dynamics Food Webs Academic Press, p.167-78 - Topology, tinkering and evolution of the human transcription factor network
Carlos Rodríguez-Caso, Miguel A. Medina and Ricard V. Solé
FEBS Journal, 272(24), 6423-6434
2004
- A new science for a connected world
Sergi Valverde
Current Anthropology, 45(4), 565-566
Buchanan, Mark (2003). Nexus: Small Worlds and the Groundbreaking Theory of Networks. WW Norton & Company - An error catastrophe in cancer?
Ricard V. Solé and Thomas S. Deisboeck
Journal of Theoretical Biology, 228(1), 47-54 - Analytic solution of Hubbell's model of local community dynamics
Alan J. McKane, David Alonso and Ricard V. Solé
Theoretical Population Biology, 65(1), 67-73 - Complessità Biologica
Ricard V. Solé
Enciclopedia Italiana del Novecento 12, 202-213 - Efficiency and robustness in ant networks of galleries
Jerome Buhl, Jacques Gautrais, Ricard V. Solé, P. Kuntz, Sergi Valverde, Jean-Louis Deneubourg and Guy Theraulaz
The European Physical Journal B - Condensed Matter and Complex Systems, 42(1), 123-129 - Habitat fragmentation and biodiversity collapse in neutral communities
Ricard V. Solé, David Alonso and Joan Saldanya
Ecological Complexity, 1(1), 65-75 - "Information Theory of Complex Networks: On Evolution and Architectural Constraints"
Ricard V. Solé and Sergi Valverde
In: Ben-Naim, E.; Frauenfelder, H. & Toroczkai, Z. (eds.) Complex Networks. Springer-Verlag Berlin, p.189-207 - Interaction strengths in food webs: issues and opportunities
Eric L. Berlow, Anje-Margriet Neutel, Joel E. Cohen, Peter C. De Ruiter, Bo Ebenman, Mark Emmerson, Jeremy W. Fox, Vincent A. A. Jansen, J. Iwan Jones, Giorgos D. Kokkoris, Dmitrii O. Logofet, Alan J. Mckane, José Mª Montoya and Owen Petchey
Journal of Animal Ecology, 73(3), 585-598 - Internet's Critical Path Horizon
Sergi Valverde and Ricard V. Solé
The European Physical Journal B - Condensed Matter and Complex Systems, 38(2), 245-252 - Patterns in syntactic dependency networks
Ramon Ferrer i Cancho, Ricard V. Solé and Reinhard Köhler
Physical Review E, 69(5), 051915 - Sampling Hubbell's Neutral Theory of Biodiversity
David Alonso and Alan J. McKane
Ecology Letters, 7(10), 901-910 - The large-scale organization of chemical reaction networks in astrophysics
Ricard V. Solé and Andreea Munteanu
Europhysics Letters, 68(2), 170-176
2003
- Adaptive walks in a gene network model of morphogenesis: insights into the Cambrian explosion
Ricard V. Solé, Pau Fernández and Stuart A. Kauffman
International Journal of Developmental Biology, 47(7-8), 685-693 - Chaos in a bottle
Ricard V. Solé and David Alonso
Trends in Ecology & Evolution, 18(11), 556-557
Cushing, J. M. et al. (eds.) Chaos in Ecology. Experimental Nonlinear Dynamics. Academic Press - Coinfection and superinfection in RNA virus populations: a selection-mutation model
Joan Saldanya, Santiago F. Elena and Ricard V. Solé
Mathematical Bioscience, 183(2), 135-160 - "Complex Networks in Genomics and Proteomics"
Ricard V. Solé and Romualdo Pastor-Satorras
In: Bornholdt, S. & Schuster, H. G. (eds.) Handbook of Graphs and Networks. From the Genome to the Internet. Wiley-VCH, p.145-67 - Evolving protein interaction networks through gene duplication
Romualdo Pastor-Satorras, Eric D. Smith and Ricard V. Solé
Journal of Theoretical Biology, 222(2), 199-210 - Food web complexity and higher-level ecosystem services
José Mª Montoya, Miguel A. Rodríguez and Bradford A. Hawkins
Ecology Letters, 6(7), 587-593 - Helical Lévy Walks: Adjusting searching statistics to resource availability in microzooplankton
Fede Bartumeus, Francesc Peters, Salvador Pueyo, Cèlia Marrassé and Jordi Catalan
Proceedings of the National Academy of Sciences, 100(22), 12771-12775 - Least effort and the origins of scaling in human language
Ramon Ferrer i Cancho and Ricard V. Solé
Proceedings of the National Academy of Sciences, 100(3), 788-791Premi Ciutat de Barcelona (2003) a l'Investigació Científica (Barcelona Award to Scientific Research):
UPF: Premis i distincions més destacats curs 2003-2004
Featured in:
Origo (23/01/2003): "A nyelv csak varázsütésre alakulhatott ki"
Nature News (22/01/2003): Philip Ball. "Language evolved in a leap"
science.ORF.at: "Sprunghafte Entstehung der Sprache?"
Proceedings National Acad. Sciences USA
- Life on a network (book review)
Ricard V. Solé
The Quarterly Review of Biology, 78(1), 85-86 - Modularity “for Free” in Genome Architecture?
Ricard V. Solé and Pau Fernández
arXiv preprint arXiv:0312032 - On the origin of plankton patchiness
Jose M. G. Vilar, Ricard V. Solé and J. M. Rubí
Physica A: Statistical Mechanics and its Applications, 317(1), 239-246 - "Optimization in Complex Networks"
Ramon Ferrer i Cancho and Ricard V. Solé
In: Pastor-Satorras, R.; Rubí, M. & Díaz-Guilera, A. (eds.) Statistical Mechanics of Complex Networks. Springer-Verlag Berlin, p.114-26 - Phase Transitions in Unstable Cancer Cell Populations
Ricard V. Solé
The European Physics Journal B - Condensed Matter and Complex Systems, 35(1), 117-123 - Topological properties of food webs: from real data to community assembly models
José Mª Montoya and Ricard V. Solé
Oikos, 102(3), 614-622
2002
- A model of large-scale proteome evolution
Ricard V. Solé, Romualdo Pastor-Satorras, Eric D. Smith and Thomas B. Kepler
Advances in Complex Systems, 5(01), 43-54Featured in:
Science STKE (30/09/2003): Wagner, A. "Does Selection Mold Molecular Networks?" Science Signaling, 2003(202), pe41Included in the collected papers book:
Newman, M. et al. (2006). The Structure and Dynamics of Networks. Princeton University Press, p.396-407 - Biomass-Diversity Responses and Spatial Dependencies in Disturbed Tallgrass Prairies
Javier G. P. Gamarra and Ricard V. Solé
Journal of Theoretical Biology, 215(4), 469-480 - Common Pattern Formation, Modularity and Phase Transitions in a Gene Network Model of Morphogenesis
Ricard V. Solé, Isaac Salazar-Ciudad and Jordi García-Fernández
Physica A: Statistical Mechanics and its Applications, 305(3-4), 640-654 - Complex Discrete Dynamics from Simple Continuous Population Models
Javier G. P. Gamarra and Ricard V. Solé
Bulletin of Mathematical Biology, 64(3), 611-620 - Controlling chaos in unidimensional maps using macroevolutionary algorithms
Jesús Marín and Ricard V. Solé
Physical Review E, 65(2), 026207 - Extinction dynamics in mainland-island metapopulations: An N-patch stochastic model
David Alonso and Alan McKane
Bulletin of Mathematical Biology, 64(5), 913-958 - "Extinctions and Biodiversity in the Fossil Record"
Ricard V. Solé and Mark Newman
In: Mooney, H. A. & Canadell, J. G. (eds.) Encyclopedia of Global Environmental Change, Vol. 2. Wiley, p.297-301 - Immunization of complex networks
Romualdo Pastor-Satorras and Alessandro Vespignani
Physical Review E, 65, 036104 - Metapopulation dynamics and spatial heterogeneity in cancer
Isabel González-García, Ricard V. Solé and Josep Costa
Proceedings of the National Academy of Sciences, 99(20), 13085-13089 - Metapopulation Ecology (book review)
Ricard V. Solé and Javier G.P. Gamarra
Bulletin of Mathematical Biology, 64(1), 209-212 - "Modeling macroevolutionary patterns: An ecological perspective"
Ricard V. Solé
In: Lässig, M. & Valleriani, A. (eds.) Biological Evolution and Statistical Physics. Springer-Verlag Berlin Heidelberg, p.312-37Econophysics paper of the month: ECONOPHYSICS 2000-12-01
- Mutual interference between predators can give rise to Turing spatial patterns
David Alonso, Fede Bartumeus and Jordi Catalan
Ecology, 83(1), 28-34 - Optimizing the Encounter Rate in Biological Interactions: Lévy versus Brownian Strategies
Fede Bartumeus, Jordi Catalan, U. L. Fulco, M. L. Lyra and G. M. Viswanathan
Physical Review Letters, 88(9), 097901 - Recovery after mass extinction: evolutionary assembly in large-scale biosphere dynamics
Ricard V. Solé, José Mª Montoya and Douglas H. Erwin
Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 357(1421), 697-707 - Scale-free Networks from Optimal Design
Sergi Valverde, Ramon Ferrer i Cancho and Ricard V. Solé
Europhysics Letters, 60(4), 512-517 - Selection, Tinkering, and Emergence in Complex Networks
Ricard V. Solé, Ramon Ferrer i Cancho, José Mª Montoya and Sergi Valverde
Complexity, 8(1), 20-33 - Self-organized critical traffic in parallel computer networks
Sergi Valverde and Ricard V. Solé
Physica A: Statistical Mechanics and its Applications, 312(3-4), 636-648 - Self-organized Instability in Complex Ecosystems
Ricard V. Solé, David Alonso and Alan McKane
Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, 357(1421), 667-681Featured in: Pour la Science, December 2003, December 26th, 2000.
- Small World Patterns in Food Webs
José Mª Montoya and Ricard V. Solé
Journal of Theoretical Biology, 214(3), 405-412Featured in:
- Spatial forecasting: Detecting determinism from single snapshots
Patrick Marcos-Nikolaus, Jose M. Martin-González and Ricard V. Solé
International Journal of Bifurcations and Chaos, 12(02), 369-376 - Spatial Patterns in Ant Colonies
Guy Theraulaz, Eric Bonabeau, Stamatios C. Nicolis, Ricard V. Solé, Vincent Fourcassié, Stéphane Blanco, Richard Fournier, Jean-Louis Joly, Pau Fernández, Anne Grimal, Patrice Dalle and Jean-Louis Deneubourg
Proceedings of the National Academy of Sciences, 99(15), 9645-9649Featured in:
Nature News and Views (11/07/2002): "Theoretical biology: Ants on a Turing trail"
Nature News (09/07/2002): "Patterns shape ant cemeteries"
- Task partitioning in a Ponerine Ant
Guy Theraulaz, Eric Bonabeau, Ricard V. Solé, Bertrand Schatz and Jean-Louis Deneubourg
Journal of theoretical biology, 215(4), 481-489 - The Biosphere as a Complex Adaptive System: Preface
Ricard V. Solé and Simon Levin
Philosophical Transactions of the Royal Society B: Biological Sciences, 357(1421), 617-618 - Zipf´s law and random texts
Ramon Ferrer i Cancho and Ricard V. Solé
Advances in Complex Systems, 5(01), 1-6
2001
- Complex Systems: Chaos and Beyond
Ricard V. Solé
Society for Industrial and Applied Mathematics Review, 43(4), 738-740 - Complexity and Fragility in Ecological Networks
Ricard V. Solé and José Mª Montoya
Proceedings of the Royal Society of London. Series B: Biological Sciences, 268(1480), 2039-2045Featured in:
The New York Times (26/12/2000): "First cells, Then Species, Now the Web"
- Control, Synchrony and the Persistence of Chaotic Populations
Javier G. P. Gamarra, Ricard V. Solé and David Alonso
Chaos, Solitons & Fractals, 12(2), 235-249 - Epidemic dynamics and endemic states in complex networks
Romualdo Pastor-Satorras and Alessandro Vespignani
Physical Review E, 63(6), 066117 - Epidemic Spreading in Scale-Free Networks
Romualdo Pastor-Satorras and Alessandro Vespignani
Physical Review Letters, 86(14), 3200Featured in :
USA Today (02/06/2002): "Virus researchers: Internet needs immune system"
Physics World News (04/04/2001): "Internet aids the spread of computer viruses"
Physics. American Physical Society (29/03/2001): "Focus: Internet Plagues Spread Rapidly"
Nature News (09/03/2001): Philip Ball. "Networking can be hazardous"
- Field theory for a reaction-diffusion model of quasispecies dynamics
Romualdo Pastor-Satorras and Ricard V. Solé
Physical Review E, 64(5), 051909 - Information transfer and phase transitions in a model of Internet Traffic
Ricard V. Solé and Sergi Valverde
Physica A: Statistical Mechanics and its Applications, 289(3), 595-605 - Model of Droplet Dynamics in the Argentine Ant Linepithema Humile (Mayr)
Guy Theraulaz, Eric Bonabeau, Christian Sauwens, Jean-Louis Deneubourg, Arnaud Lioni, François Libert, Luc Passera and Ricard V. Solé
Bulletin of Mathematical Biology, 63(6), 1079-1093 - Multiple infection dynamics has pronounced effects on the fitness of RNA viruses
Rosario Miralles, Ramón Ferrer, Ricard V. Solé, Andrés Moya and Santiago F. Elena
Journal of Evolutionary Biology, 14(4), 654-662 - Neural Networks as sources of chaotic motor activity in ants and how complexity develops at the social scale
Octavio Miramontes, Ricard V. Solé and Brian C. Goodwin
International Journal of Bifurcations and Chaos, 11(06), 1655-1664 - On the fractal nature of ecological and macroevolutionary dynamics
Ricard V. Solé, David Alonso, Jordi Bascompte and Susanna C. Manrubia
Fractals, 9(01), 1-16 - Orden y caos en sistemas complejos. Aplicaciones
Ricard V. Solé and Susanna C. Manrubia
Barcelona: Edicions UPC (Politext, 94)This book can be found in: Edicions UPC
- Orden y caos en sistemas complejos. Fundamentos
Ricard V. Solé and Susanna C. Manrubia
Barcelona: Edicions UPC (Politext, 93)This book can be found in: Edicions UPC
- Phenotypic and dynamical transitions in model genetic networks I: Emergence of patterns and genotype-phenotype relationships
Isaac Salazar-Ciudad, Stuart A. Newman and Ricard V. Solé
Evolution & Development, 3(2), 84-94Featured in:
Nature News & Views (10/05/2001): Eörs Szathmáry. "Evolution: Development circuits rewired". Nature, 411, 143-145 - Phenotypic and dynamical transitions in model genetic networks II: Application to the evolution of segmentation mechanisms
Isaac Salazar-Ciudad, Ricard V. Solé and Stuart A. Newman
Evolution & Development, 3(2), 95-103Featured in:
Nature News & Views (10/05/2001): Eörs Szathmáry. "Evolution: Development circuits rewired". Nature, 411, 143-145 - Scaling in Ecological Size Spectra
Juan Camacho and Ricard V. Solé
Europhysics Letters, 55(6), 774-780 - Self-organized spatial structures in a ratio-dependent predator-prey model
Fede Bartumeus, David Alonso and Jordi Catalan
Physica A: Statistical Mechanics and its Applications, 295(1-2), 53-57 - The Small World of Human Language
Ramon Ferrer i Cancho and Ricard V. Solé
Proceedings of the Royal Society of London. Series B: Biological Sciences, 268(1482), 2261-2265This paper has been featured in:
- Topology of Technology Graphs: Small World Patterns in Electronic Circuits
Ramon Ferrer i Cancho, Christiaan Janssen and Ricard V. Solé
Physical Review E, 64(4), 046119Featured in:
Steven H. Strogatz (2003). Sync: The Emerging Science of Spontaneous Order. Penguin UK
Technology Research News (21/11/2001): "Circuits show six degrees of separation"
Nature News (10/10/2001): Philip Ball. "Circuits are small worlds"
- Two Regimes in the Frequency of Words and the Origins of Complex Lexicons: Zipf's Law Revisited
Ramon Ferrer i Cancho and Ricard V. Solé
Journal of Quantitative Linguistics, 8(3), 165-173
2000
- Bifurcations and Chaos in Ecology: Lynx Returns Revisited
Javier G. P. Gamarra and Ricard V. Solé
Ecology Letters, 3(2), 114-121 - Characterizing Turbulence in Globally Coupled Maps with Stochastic Finite Automata
Jordi Delgado and Ricard V. Solé
Physics Letters A, 270(6), 314-319 - Extinctions and Taxonomy in a Trophic Model of Coevolution
Juan Camacho and Ricard V. Solé
Physical Review E, 62(1), 1119-1123 - Gene network dynamics and the evolution of development
Ricard V. Solé, Isaac Salazar-Ciudad and Stuart A. Newman
Trends in Ecology & Evolution, 15(12), 479-480 - Gene Networks Capable of Pattern Formation: From Induction to Reaction-Diffusion
Isaac Salazar-Ciudad, Jordi García-Fernández and Ricard V. Solé
Journal of Theoretical Biology, 205(4), 587-603 - Lyapunov exponents in Random Boolean Networks
Bartolo Luque and Ricard V. Solé
Physica A: Statistical Mechanics and its Applications, 284(1), 33-45 - Mean-Field Stochastic Theory for Species-rich Assembled Communities
Alan McKane, David Alonso and Ricard V. Solé
Physical Review E, 62(6), 8466-8484 - Pattern Formation and Optimization in Army Ant Raids
Ricard V. Solé, Eric Bonabeau, Jordi Delgado, Pau Fernández and Jesus Marín
Artificial Life, 6(3), 219-226 - "Patterns of Extinction and Biodiversity in the Fossil Record"
Ricard V. Solé
In: Munn, T. (ed.) Encyclopedia of Global Environmental Change, vol.5. Wiley. - Scaling in a network model of a multispecies ecosystem
Ricard V. Solé, David Alonso and Alan McKane
Physica A: Statistical Mechanics and its Applications, 286(1), 337-344 - Self-synchronization and Task Fulfilment in Ant Colonies
Jordi Delgado and Ricard V. Solé
Journal of Theoretical Biology, 205(3), 433-441 - Signs of Life: How complexity pervades Biology
Ricard V. Solé and Brian C. Goodwin
New York: Basic BooksBook reviews:
- The DivGame Simulator: A Stochastic Cellular Automata Model of Rainforest Dynamics
David Alonso and Ricard V. Solé
Ecological Modelling, 133(1-2), 131-141
1999
- Controlling Chaos in Ecology: From Deterministic to Individual-based Models
Ricard V. Solé, Javier G. P. Gamarra, Marta Ginovart and Daniel López
Bulletin of Mathematical Biology, 61(6), 1187-1207 - Criticality and Scaling in Evolutionary Ecology
Ricard V. Solé, Susanna C. Manrubia, Michael Benton, Stuart Kauffman and Per Bak
Trends in Ecology & Evolution, 14(4), 156-160 - "Evolutionary Optimization through extinction dynamics"
Jesús Marín and Ricard V. Solé
In: Banzhaf, W. et al. (eds.) Proceedings of the Genetic and Evolutionary Computation Conference, Vol.2. Morgan Kaufmann, p.1344-9 - Landscapes, Gene Networks and Pattern Formation: On the Cambrian Explosion
Ricard V. Solé, Isaac Salazar-Ciudad and Jordi García-Fernández
Advances in Complex Systems, 02(04), 313-337 - Macroevolutionary algorithms: A new optimization method on fitness landscapes
Jesús Marín and Ricard V. Solé
IEEE Transactions on Evolutionary Computation, 3(4), 272-286 - Noise and periodic modulations in neural excitable media
Jose M. G. Vilar, Ricard V. Solé and J. M. Rubí
Physical Review E, 59(5), 5920-5927 - Red Queen Dynamics, Competition and Critical Points in a Model of RNA Virus Quasispecies
Ricard V. Solé, Ramón Ferrer, Isabel González-García, Josep Quer and Estebán Domingo
Journal of Theoretical Biology, 198(1), 47-59 - Self-organized criticality in ecology and evolution (reply)
Ricard V. Solé, Susanna C. Manrubia, Michael J. Benton, Stuart Kauffman and Per Bak
Trends in Ecology & Evolution, 14(8), 321-322 - Statistical Measures of Complexity for Strongly Interacting Systems
Ricard V. Solé and Bartolo Luque
arXiv preprint arXiv:9909002 - "Statistical Mechanics of Network Models of Macroevolution and Extinction"
Ricard V. Solé
In: Reguera, D.; Vilar, J.M.G. & Rubí, J.M. (eds.) Statistical Mechanics of Biocomplexity. Springer-Verlag, p.217-50 - Statistical Properties of Genealogical Trees
Bernard Derrida, Susanna C. Manrubia and Damián H. Zanette
Physical Review Letters, 82(9), 1987 - "Task Fulfilment and Temporal Patterns of Activity in Artificial Ant Colonies"
Jordi Delgado and Ricard V. Solé
In: Floreano, D.; Nicoud, J-D. & Mondada, F. (eds.) Advances in Artificial Life. Springer-Verlag Berlin Heidelberg, p.606-15 - Transient Dynamics and Scaling Phenomena in Urban Growth
Susanna C. Manrubia, Damián H. Zanette and Ricard V. Solé
Fractals, 7(1), 1-8
1998
- A Simple Model of Large-scale Organization in Evolution
Susanna C. Manrubia and Maya Paczuski
International Journal of Modern Physics C, 9(07), 1025-1032 - Chaos, Dispersal and Extinction in Coupled Ecosystems
Ricard V. Solé and Javier G. P. Gamarra
Journal of Theoretical Biology, 193(3), 539-541 - Effects of Habitat Destruction in a Prey-Predator Metapopulation Model
Jordi Bascompte and Ricard V. Solé
Journal of Theoretical Biology, 195(3), 383-393 - Effects of Noise in Symmetric Two-Species Competition
José M. G. Vilar and Ricard V. Solé
Physical Review Letters, 80(18), 4099-4102 - Long-Range Correlations in the Fossil Record and the Fractal Nature of Macroevolution
Ricard V. Solé, Susanna C. Manrubia, Juan Pérez-Mercader, Michael Benton and Per Bak
Advances in Complex Systems, 1(02-03), 255-266 - Mean-field Theory of Fluid Neural Networks
Jordi Delgado and Ricard V. Solé
Physical Review E, 57(2), 2204-2211 - Modeling Spatiotemporal Dynamics in Ecology
Jordi Bascompte and Ricard V. Solé
Springer (Environmental Intelligence Unit)Foreword by Robert May:
Jordi Bascompte Lab: The book can be downloaded here.
- Random Walks, Fractals and the Origins of Rainforest Diversity
Ricard V. Solé and David Alonso
Advances in Complex Systems, 1(02-03), 203-220 - Spatiotemporal patterns in nature
Jordi Bascompte and Ricard V. Solé
Trends in Ecology & Evolution, 13(5), 173-174 - Stable core and chaos control in random Boolean Networks
Bartolo Luque and Ricard V. Solé
Journal of Physics A: Mathematical and General, 31(6), 1533-1537
1997
- Aftershock series of event February 18, 1996: An interpretation in terms of self-organized criticality
Antoni M. Correig, Mercè Urquizu, Josep Vila and Susanna C. Manrubia
Journal of Geophysical Research: Solid Earth (1978–2012), 102(B12), 27407-27420 - Collective-induced computation
Jordi Delgado and Ricard V. Solé
Physical Review E, 55(3), 2338-2344 - Controlling Chaos in Random Boolean Networks
Bartolo Luque and Ricard V. Solé
Europhysics Letters, 37(9), 597-602 - Criticality and Unpredictability in Macroevolution
Ricard V. Solé and Susanna C. Manrubia
Physical Review E, 55(4), 4500 - Fractals and search paths in mammals
Jordi Bascompte and Carles Vilà
Landscape Ecology, 12(4), 213-221 - Noise Induced Transitions in Fluid Neural Networks
Jordi Delgado and Ricard V. Solé
Physics Letters A, 229(3), 183-189 - On Forest Spatial Dynamics with Gap Formation
Susanna C. Manrubia and Ricard V. Solé
Journal of Theoretical Biology, 187(2), 159-164 - Phase Transitions in random Networks: Simple analytic determination of critical points
Bartolo Luque and Ricard V. Solé
Physical Review E, 55(1), 257-260 - Population Cycles and Spatial Patterns in Snowshoe Hares: an Individual-Oriented Simulation
Jordi Bascompte, Ricard V. Solé and Norbert Martínez
Journal of Theoretical Biology, 187(2), 213-222 - Self-similarity of extinction statistics in the fossil record
Ricard V. Solé, Susanna C. Manrubia, Michael Benton and Per Bak
Nature, 388(6644), 764-767Featured in:
New Scientist (08/11/1997): "One law to rule them all"
The New York Times (02/09/1997): "Many Small Events May Add Up to One Mass Extinction"
1996
- Are Critical Phenomena Relevant to Large-Scale Evolution?
Ricard V. Solé and Jordi Bascompte
Proceedings of the Royal Society of London. Series B: Biological Sciences, 263(1367), 161-168 - Complejidad en la Frontera del Caos
Ricard V. Solé, Jordi Bascompte, Jordi Delgado, Bartolo Luque and Susanna C. Manrubia
Investigación y Ciencia: Edición Española de Scientific American, 236 (Mayo 1996), 14-21 - Extinction and self-organized criticality in a Model of Large-Scale Evolution
Ricard V. Solé and Susanna C. Manrubia
Physical Review E, 54(1), R42 - Extinction: Bad Genes or Weak Chaos?
Ricard V. Solé, Jordi Bascompte and Susanna C. Manrubia
Proceedings of the Royal Society of London. Series B: Biological Sciences, 263(1375), 1407-1413 - Habitat Fragmentation and Extinction Thresholds in spatially explicit models
Jordi Bascompte and Ricard V. Solé
Journal of Animal Ecology, 65(4), 465-473 - On Cellular Automata Models for Quantum Systems
José M. Gómez-Vilar and Ricard V. Solé
Journal of Physics A: Mathematical and General, 29(24), 8169-8171 - On Macroevolution, Extinctions and Critical Phenomena
Ricard V. Solé
Complexity, 1(6), 40-44 - Phase Transitions and Complex Systems: Simple, nonlinear models capture complex systems at the edge of chaos
Ricard V. Solé, Susanna C. Manrubia, Bartolo Luque, Jordi Delgado and Jordi Bascompte
Complexity, 1(4), 13-26 - Self-organized Criticality in Rainforest Dynamics
Susanna C. Manrubia and Ricard V. Solé
Chaos, Solitons & Fractals, 7(4), 523-541 - Universal Computation in Fluid Neural Networks
Ricard V. Solé and Jordi Delgado
Complexity, 2(2), 49-56
1995
- Appropiate formulations of dispersal in spatially structured models (reply)
Jordi Bascompte and Ricard V. Solé
Journal of Animal Ecology, 64(5), 665-666 - Are Rainforests Self-Organized in a Critical State?
Ricard V. Solé and Susanna C. Manrubia
Journal of Theoretical Biology, 173(1), 31-40 - Controlling Chaos in Discrete Neural Networks
Ricard V. Solé and Liset Menéndez de la Prida
Physics Letters A, 199(1-2), 65-69 - Information at the edge of chaos in Fluid Neural Networks
Ricard V. Solé and Octavio Miramontes
Physica D: Nonlinear Phenomena, 80(1-2), 171-180 - Measuring Chaos from Spatial Information
Ricard V. Solé and Jordi Bascompte
Journal of Theoretical Biology, 175(2), 139-147 - Phase Transitions and Antichaos in Generalized Kauffman Networks
Ricard V. Solé and Bartolo Luque
Physics Letters A, 196(5), 331-334 - Rethinking Complexity: Modelling Spatiotemporal Dynamics in Ecology
Jordi Bascompte and Ricard V. Solé
Trends in Ecology & Evolution, 10(9), 361-366 - Self-similarity in Rain Forests: Evidence for a Critical State
Ricard V. Solé and Susanna C. Manrubia
Physical Review E, 51(6), 6250-6253 - Spatial dynamics and chaos (reply)
Jordi Bascompte and Ricard V. Solé
Trends in Ecology and Evolution, 10, 491-492
1994
- Ecological Chaos
Ricard V. Solé and Jordi Bascompte
Nature, 367(6462), 418 - Local and Ensemble Dynamics of Linked Populations: Reply to Ruxton
Jordi Bascompte and Ricard V. Solé
Journal of Animal Ecology, 63(4), 1003 - Spatially Induced Bifurcations in Single-Species Population Dynamics
Jordi Bascompte and Ricard V. Solé
Journal of Animal Ecology, 63(2), 256-264
1993
- Chaotic Turing Structures
Ricard V. Solé and Jordi Bascompte
Physics Letters A, 179(4-5), 325-331 - Collective Behaviour of Random-Activated Mobile Cellular Automata
Octavio Miramontes, Ricard V. Solé and Brian C. Goodwin
Physica D: Nonlinear Phenomena, 63(1-2), 145-160 - "Emergent Behaviour in Insect Societies: Global Oscillations, Chaos and Computation"
Ricard V. Solé, Octavio Miramontes and Brian C. Goodwin
In: Haken, H. & Mikhailov, A. (eds.) Interdisciplinary Approaches to Nonlinear Complex Systems. Springer-Verlag Berlin, p.77-88 - "Multifractals in Rainforest Ecosystems: Modelling and Simulation"
Ricard V. Solé, Susanna C. Manrubia and Bartolo Luque
In: Novak, M.M. (ed.) Fractals in the Natural and Applied Sciences. North-Holland, p.397-408 - Oscillations and Chaos in Ant Societies
Ricard V. Solé, Octavio Miramontes and Brian C. Goodwin
Journal of Theoretical Biology, 161(3), 343-357This paper has been featured in the books:
Stewart, I. (1999). Life's Other Secret: The New Mathematics of the Living World>/em>. Wiley
- Stability and Complexity of Spatially Extended Two-species Competition
Ricard V. Solé, Jordi Bascompte and Joaquim Valls
Journal of Theoretical Biology, 159(4), 469-480
1992
- Chaotic Behaviour in Simulated Planktonic Successions, I: Discrete Temporal Maps
Ricard V. Solé, Jordi Bascompte and Joaquim Valls
Scientia Marina, 56(4), 285-292 - Nonequilibrium Dynamics in Lattice Ecosystems: Chaotic Stability and Dissipative Structures
Ricard V. Solé, Jordi Bascompte and Joaquim Valls
Chaos: An Interdisciplinary Journal of Nonlinear Science, 2(3), 387-395 - Nonlinear Phenomena and Chaos in a Monte Carlo Simulated Microbial Ecosystem
Ricard V. Solé and Joaquim Valls
Bulletin of Mathematical Biology, 54(6), 939-955 - On Structural Stability and Chaos in Biological Systems
Ricard V. Solé and Joaquim Valls
Journal of Theoretical Biology, 155(1), 87-102 - Self-Organized Criticality in Monte Carlo Simulated Ecosystems
Ricard V. Solé, Daniel López, Marta Ginovart and Joaquim Valls
Physics Letters A, 172(1-2), 56-61 - Spiral Waves, Chaos and Multiple Attractors in Lattice Models of Interacting Populations
Ricard V. Solé, Joaquim Valls and Jordi Bascompte
Physics Letters A, 166(2), 123-128
1991
- A Computer Simulation Model for Cellular Migration in Planarians
Ricard V. Solé, Jordi Ocaña and Jaume Baguñà
Mathematical and Computer Modelling, 11, 1201-1204 - Characterization of Spatiotemporal Chaos from Macroscopic Measures
Ricard V. Solé and Joaquim Valls
Physics Letters A, 161(3), 241-246 - "Energy Flow-Networks and the Maximum Entropy Formalism"
Jorge Wagensberg, A. García and Ricard V. Solé
In: Grandy Jr., W.T. & Schick, L.H. (eds.) Maximum Entropy and Bayesian Methods. Kluwer Academic Publishers, p.253-64 - "Flow-Network Organization in Ecosystems and the Mathematical Theory of Information"
Jorge Wagensberg, Ricard V. Solé and Ambrosio García
In: Homage to Ramon Margalef. Universitat de Barcelona (Oecologia Aquatica, 10), p.387-91 - Order and Chaos in a 2D Lotka-Volterra Coupled Map Lattice
Ricard V. Solé and Joaquim Valls
Physics Letters A, 153(6-7), 330-336
1990
- Connectivity and information transfer in flow networks: Two magic numbers in ecology?
Jorge Wagensberg, Ambrosio García and Ricard V. Solé
Bulletin of Mathematical Biology, 52(6), 733-740